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Bullet point summary of chapters 20-29. It is concise but it has all important information from the chapters.
Summary of biology 2e Online version: https://openstax.org/books/biology-2e/ Chapter 20: phylogenies and the history of life 20.1 Organizing Life on Earth ● A phylogenetic tree reflects evolutionary relationships among organisms or groups of organisms → like a map of evolutionary history ○ Rooted trees: show a common ancestor ○ Unrooted trees: do not show a common ancestor ● Taxonomy: internationally shared classification systems with each organism placed into increasingly more inclusive groupings 20.2 Determining Evolutionary Relationships ● Homologous structures: features that overlap morphologically (in form) and genetically ○ Organisms that share homologous structures are more closely related than those that do not ○ e.g., the bones in bat and bird wings ○ Share a similar embryonic origin ● Analogy or homoplasy: similar characteristics that occur because of environmental constraints and not due to a close evolutionary relationship ○ E.g., insects use wings to fly like bats and birds, but the wing structure and embryonic origin is completely different ○ Analogous organs have a similar function ● Homologous traits are organized into cladistics ○ It sorts organisms into clades: groups of organisms that descended from a single ancestor ● Maximum parsimony: events occurred in the simplest, most obvious way ○ E.g., if a group hikers entered a forest, most would hike on established trails rather than forge new ones 20.3 Perspectives on the Phylogenetic Tree ● Horizontal/lateral gene transfer: transfer of genes between unrelated species ● Standard phylogeny: genes pass between distantly related species ● HGT in Prokaryotes ○ Transformation: bacteria takes up naked DNA ○ Transduction: a virus transfers the genes ○ Conjugation: a hollow tube, or pilus transfers genes between organisms ● HGT in Eukaryotes ○ Rarer and has a much smaller evolutionary impact than in prokaryotes ○ In plants, gene transfer in species that cannot cross-pollinate by normal means ○ Transposons or “jumping genes” have shown a transfer between rice and millet plant species ○ Fungal species feeding on yew trees, from which the anti-cancer drug TAXOL® is derived from the bark, have acquired the ability to make taxol themselves ● Web of life: ○ Some individual prokaryotes transferred the bacteria that caused mitochondrial development to the new eukaryotes ○ Other species transferred the bacteria that gave rise to chloroplasts ● Ring of life: all three domains of life evolved from a pool of primitive prokaryotes Key terms: https://openstax.org/books/biology-2e/pages/20-key-terms Chapter 21: viruses 21.1 Viral Evolution, Morphology, and Classification ● Viruses are tiny, noncellular entities - can only be seen with an electron microscope ● Their genomes contain either DNA or RNA - never both ● Replicate by using the replication proteins of a host cell or of the viral genome ● Viruses are diverse → infect archaea, bacteria, fungi, plants, and animals ● Many viruses use some sort of glycoprotein to attach to their host cells via molecules on the cell called viral receptors ○ Adenovirus (non-enveloped animal virus that causes respiratory illnesses in humans) uses glycoproteins ● Capsids of viruses are classified into four groups ○ Helical capsids: long and cylindrical → many plant viruses (e.g. TMV) ○ Icosahedral: roughly spherical, e.g. poliovirus or herpesviruses ○ Head-and-tail infect bacteria and have a head that is similar to icosahedral viruses and a tail shaped like helical viruses ○ Enveloped: membranes (from the host cell) surrounds the capsids ■ Animal viruses, such as HIV
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